File bout.hxx

Functions

int BoutInitialise(int &argc, char **&argv)

BOUT++ initialisation. This function must be called first, passing command-line arguments.

This will call MPI_Initialize, and if BOUT++ has been configured with external libraries such as PETSc then these will be initialised as well.

Example

A minimal BOUT++ program consists of:

int main(int argc, char** argv) {
  BoutInitialise(argc, argv);

  BoutFinalise();
}

Usually this function is called in a standard main() function, either by including boutmain.hxx or by including bout/physicsmodel.hxx and using the BOUTMAIN macro.

Initialise BOUT++

Inputs

The command-line arguments argc and argv are passed by reference, and pointers to these will be stored in various places in BOUT++.

Outputs

Any non-zero return value should halt the simulation. If the return value is less than zero, the exit status from BOUT++ is 0, otherwise it is the return value of BoutInitialise.

int bout_run(Solver *solver, rhsfunc physics_run)

Run the given solver. This function is only used for old-style physics models with standalone C functions The main() function in boutmain.hxx calls this function to set up the RHS function and add bout_monitor.

int BoutFinalise(bool write_settings = true)

BOUT++ finalisation. This should be called at the end of the program.

Frees memory, flushes buffers, and closes files. If BOUT++ initialised MPI or external libraries, then these are also finalised.

If write_settings is true, output the settings, showing which options were used. This overwrites the file written during initialisation (BOUT.settings by default)

Variables

const BoutReal BOUT_VERSION = BOUT_VERSION_DOUBLE

Version number.

class BoutMonitor : public Monitor
#include <bout.hxx>

Monitor class for output. Called by the solver every output timestep.

This is added to the solver in bout_run (for C-style models) or in bout/physicsmodel.hxx

Public Functions

BoutMonitor(BoutReal timestep = -1)

Private Functions

int call(Solver *solver, BoutReal t, int iter, int NOUT)

SOLUTION MONITOR FUNCTION

Called each timestep by the solver

Private Members

RunMetrics run_data
namespace bout

SNB model

namespace experimental

Typedefs

using SignalHandler = void (*)(int)

Function type for handling signals.

Functions

void setupSignalHandler(SignalHandler signal_handler)

Set a signal handler for user-requested clean exit, and (optionally) segmentation faults and floating point errors

  • For segmentation faults, compile with --enable-signal.
  • For floating point errors, compile with --enable-sigfpe

void defaultSignalHandler(int sig)

The default BOUT++ signal handler: throw an exception with an appropriate message

void setupGetText()

Set up the i18n environment.

auto parseCommandLineArgs(int argc, char **argv)

Parse the “fixed” command line arguments, like help and -d.

void checkDataDirectoryIsAccessible(const std::string &data_dir)

Throw an exception if data_dir is either not a directory or not accessible. We do not check whether we can write, as it is sufficient that the files we need are writeable

void setupOutput(const std::string &data_dir, const std::string &log_file, int verbosity, int MYPE = 0)

Set up the output: open the log file for each processor, enable or disable the default outputs based on verbosity, disable writing to stdout for MYPE != 0

void savePIDtoFile(const std::string &data_dir, int MYPE)

Save the process ID for processor N = MYPE to file “.BOUT.pid.N” in data_dir, so it can be shut down by user signal

Throws if it was not possible to create the file

void printStartupHeader(int MYPE, int NPES)

Print the initial header.

void printCompileTimeOptions()

Print the compile-time options.

void printCommandLineArguments(const std::vector<std::string> &original_argv)

Print the arguments given on the command line.

bool setupBoutLogColor(bool color_output, int MYPE)

Setup the pipe etc and run stdout through bout-log-color. Return true if it was successful

void setRunStartInfo(Options &options)

Set BOUT++ version information, along with current time (as started), into run section of options

void setRunFinishInfo(Options &options)

Set the current time (as finished) into run section of options

void writeSettingsFile(Options &options, const std::string &data_dir, const std::string &settings_file)

Write options to settings_file in directory data_dir.

Datafile setupDumpFile(Options &options, Mesh &mesh, const std::string &data_dir)

Setup the output dump files from options using the mesh. Files are created in the data_dir directory

struct CommandLineArgs
#include <bout.hxx>

Results of parsing the command line arguments.

Public Members

int verbosity = {4}
bool color_output = {false}
std::string data_dir = {"data"}

Directory for data input/output.

std::string opt_file = {"BOUT.inp"}

Filename for the options file.

std::string set_file = {"BOUT.settings"}

Filename for the options file.

std::string log_file = {"BOUT.log"}

File name for the log file

std::vector<std::string> original_argv

The original set of command line arguments.